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Scop3P
Presentation

Reusing existing data

Data management data licenses software licenses data journal
Presentation

Reproducible data analysis with RStudio, github and Rmarkdown

Data architecture, analysis and design Data management Data analysis
Presentation

Valorisation and intellectual properties in research data management

Data management intellectual property protection
Presentation

Preserve, publish and share your data

Data curation and archival Data management data formats ELIXIR Core resources FAIR data submission
e-learning

Introduction to Protein Structure Analysis

Visualisation Protein structure visualisation
Online material, hands-on tutorial

Introduction to Docker and Singularity

• beginner
Reproducibility Container Singularity
e-learning

Data Management and Writing a Data Management Plan

• beginner
Data management
e-learning

Basic statistics in Prism

• beginner
Statistics and probability statistics
hands-on tutorial

A tour of Machine Learning

•• intermediate
Machine learning Classification Deep Learning Machine Learning
Slideshow, Training materials

Prediction of protein structures and complexes with AlphaFold on the HPC

•• intermediate
Protein structure analysis Machine learning Structure prediction Structure visualisation Multiple sequence alignment AlphaFold Database (13181)
Presentation, course materials

Introduction to Nextflow workshop

• beginner
Workflows Nextflow DSL2
Training materials

Containers & Workflow pipelines workshop

•• intermediate
Containers Nextflow
slides, R Shiny application

Proteomics Data Analysis (PDA)

•• intermediate
Proteomics proteomics quantitative proteomics
slides, scripts

Bioinformatics for Proteomics

• beginner
Proteomics
e-learning

Basic statistics theory

• beginner
Statistics and probability statistics
hands-on tutorial

Bulk RNASeq analysis

•• intermediate
Transcriptomics Gene expression Differential gene expression profiling Expression analysis Data analysis NGS RNASeq transcriptomics
hands-on tutorial

R introduction

• beginner
R script Software engineering data visualisation programming
hands-on tutorial

Explore Protein Structures with ChimeraX

• beginner
Protein structure analysis Sequence analysis Structure visualisation ChimeraX Protein Structure analysis
e-learning

Introduction to CLC Main Workbench

• beginner
Sequence alignment Sequence Analysis
hands-on tutorial

Introduction to Protein Design

•• intermediate
Protein structure analysis Machine learning Structure prediction AlphaFold Structure design
hands-on tutorial

NGS analysis

•• intermediate
Sequencing NGS Next Generation Sequencing
hands-on tutorial

Introduction to Git and Github

• beginner
Software engineering Git Github Version control
hands-on tutorial

Gentle Introduction to Python

• beginner
Python script Software engineering Programming Python
hands-on tutorial

Introduction to Research Data Management

• beginner
Data quality management Data curation and archival Research Data Management Research Publishing
Jupyter notebooks

Gentle hands-on introduction to Python programming

• beginner
Software engineering Python programming
hands-on tutorial

AlphaFold and friends on the HPC

•• intermediate
Protein structure analysis Machine learning Structure prediction AlphaFold Database (13181)
e-learning

Introduction to Linux command line

• beginner
Operating system name Linux

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Scop3P

Reusing existing data

Reproducible data analysis with RStudio, github and Rmarkdown

Valorisation and intellectual properties in research data management

Preserve, publish and share your data

Introduction to Protein Structure Analysis

Introduction to Docker and Singularity

Data Management and Writing a Data Management Plan

Basic statistics in Prism

A tour of Machine Learning

Prediction of protein structures and complexes with AlphaFold on the HPC

Introduction to Nextflow workshop

Containers & Workflow pipelines workshop

Proteomics Data Analysis (PDA)

Bioinformatics for Proteomics

Basic statistics theory

Bulk RNASeq analysis

R introduction

Explore Protein Structures with ChimeraX

Introduction to CLC Main Workbench

Introduction to Protein Design

NGS analysis

Introduction to Git and Github

Gentle Introduction to Python

Introduction to Research Data Management

Gentle hands-on introduction to Python programming

AlphaFold and friends on the HPC

Introduction to Linux command line

Career guidance for PhDs and postdocs

Reproducible data analysis

Self-leadership

Self-leadership: look within to succeed

Strategic use of generative AI

Active Bystander Approach

Career guidance for PhDs and postdocs

Career guidance for PhDs and postdocs

Programming in Python: master your first project

Basic statistics in R

Managing your PhD

Assess protein dynamics & post-translational modifications

High performance computing on the Vlaamse SuperComputer

Linux command line

Active Bystander Approach

QuPath: quantitative pathology & bioimage analysis software

Genome assembly using long-reads

Negotiating with success

Managing stress and burnout - essentials

Single cell RNA-seq data analysis: essentials

Single cell RNA-seq analysis

How to connect on and off the conference stage

Variant analysis using long-reads

Basic image processing using Fiji

Managing stress and burnout - essentials

Single cell RNA-seq analysis

Effective oral presentations

Single cell RNA-seq data analysis: essentials

Analysis of single-cell RNASeq data

Basic proteomics